Data Set (knb-lter-sbc.73.4)

SBC LTER: Reef: Geospatial structure of microsatellite markers for the giant kelp, Macrocystis pyrifera, Santa Barbara CA, 2009

  Summary and Data Links People and Organizations Temporal, Geographic and Taxonomic Coverage Methods and Protocols  
Data Set General Information:
Identifier: knb-lter-sbc.73.4 (in the knb Catalog System)
Alternate Identifier: DOI: 10.6073/pasta/7676d49a9a0a26dc2265583e45cebb28
Alternate Identifier: DOI: 10.5061/dryad.s1b07
Alternate Identifier: knb-lter-sbc.73
Abstract:

Data package includes data and R code for the examination of geospatial genetic structure (SGS) and simulation of inbreeding in giant kelp (Macrocystis pyrifera) from the Santa Barbara Channel, California. Data are reported for microsatellite markers from individual giant kelp plants from Carpinteria Reef, Mohawk Reef and Goleta Bay, collected during September 2009. Relative X and Y coordinates (meters) were recorded for each specimen sampled. R code consists of two scripts, a) to calculate mean number of alleles per locus, and observed and expected heterozygosity, and b) to simulate self-fertilization and sibling/cousin relationships.

These data were presented in:

Johansson, Mattias L, Raimondi, Peter T, Reed, Daniel C, Coelho, Nelson C, Serrão, Ester A, Alberto, Filipe A. In press. Looking into the black box: simulating the role of self-fertilization and mortality in the genetic structure of Macrocystis pyrifera. Molecular Ecology, 22:4842–4854.

These data are also available from:

Johansson ML, Raimondi PT, Reed DC, Coelho NC, Serrão EA, Alberto FA (2013) Data from: Looking into the black box: simulating the role of self-fertilization and mortality in the genetic structure of Macrocystis pyrifera. Dryad Digital Repository. doi:10.5061/dryad.s1b07.

Short Name: Johansson Kelp Microsatellite Markers, Geospatial 2009
Publication Date: 2013-10-13
Language: english
Time Period:
Date:
2009-09-10
Time Period:
Date:
2009-09-24
Time Period:
Date:
2009-09-28
Detailed Data Description and Download:
kelp_microsatellite_markers_CARP_20090910_geospatial.csv
Microsatellite data from Carpinteria Reef in 6-digit format, with individual ID, X and Y coordinates, and ten microsatellite markers.
kelp_microsatellite_markers_MOHK_20090924_geospatial.csv
Microsatellite data from Mohawk Reef in 6-digit format, with individual ID, X and Y coordinates, and ten microsatellite markers
kelp_microsatellite_markers_GOLB_20090928_geospatial.csv
Microsatellite data from Goleta Bay in 6-digit format, with individual ID, X and Y coordinates, and ten microsatellite markers
People and Organizations:
View complete information for all parties
Contact: Information Manager, Santa Barbara Coastal LTER [  email ]
Organization Santa Barbara Coastal LTER
Owner: Johannson, Mattias L 
Owner: Raimondi, Peter T 
Owner: Reed, Daniel C 
Owner: Coelho, Nelson C 
Owner: Serrao, Esther A 
Owner: Alberto, Filipe 

Data Set Citation

How to cite this data set: Johannson, M. L. , PT. Raimondi, DC. Reed, NC. Coelho, EA. Serrao and F. Alberto. 2013. SBC LTER: Reef: Geospatial structure of microsatellite markers for the giant kelp, Macrocystis pyrifera, Santa Barbara CA, 2009. Santa Barbara Coastal LTER. doi:10.6073/pasta/7676d49a9a0a26dc2265583e45cebb28, doi:10.5061/dryad.s1b07

Key Words and Terms

By Thesaurus:
LTER, Santa Barbara Coastal
LTER Controlled Vocabulary v1 genetics, kelp, long term ecological research
Santa Barbara Coastal LTER Habitats Kelp Forest, Reef
Santa Barbara Coastal LTER Measurement Types Community Structure, Genomics
Santa Barbara Coastal LTER Places Carpinteria Reef, Goleta Bay, Mohawk Reef
LTER Controlled Vocabulary v1: Core Research Areas Population Studies
NBII Biocomplexity Alleles, Kelps, Reefs
giant kelp, Macrocystis pyrifera
inbreeding depression, macroalgae, mating system, microsatellite loci, microsatellite locus, microsatellite marker, microsatellites, self-fertilization, simulation, spatial genetic structure
Santa Barbara Coastal LTER related projects The effect of inbreeding on metapopulation dynamics of the giant kelp, Macrocystis pyrifera

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Additional Metadata

Download the original XML file (in Ecological Metadata Language) Viewable in Oxygen XML Editor