Identifier: knb-lter-sbc.53.4 (in the knb Catalog System)

Data Table

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Name: Kelp microsatellite markers, 2009
Description: characterization of microsatellite loci of the giant kelp, Macrocystis pyrifera
Number of Records: 16
Number of Columns: 13
Table Structure:
Object Name: Kelp_Microsatellite_Markers_2009.csv
Text Format:
Number of Header Lines: 1
Record Delimiter: \n
Orientation: column
Simple Delimited:
Field Delimiter: ,
Collapse Delimiters: no
Table Column Descriptions
  Locus name GenBank no. AdaptF Primer sequences AdaptR Primer sequences Repeat motif Clone size (bp) PCR annealing temperature (C) Microchecker A Size range (bp) He F_IS P_value
Column Name Locus_name  
GenBank_no  
AdaptF_Primer_seq  
AdaptR_Primer_seq  
Repeat_motif  
Clone_size_bp  
PCR_annealing_C  
Microchecker  
A  
Size_range_bp  
He  
F_IS  
P_value  
Definition Locus name GenBank accession number AdaptF Primer sequences AdaptR Primer sequences Motif repetition Clone size. Number of base pairs. PCR annealing temperature, or range of temperatures. Presence of null alleles estimated with Microchecker. Number of alleles found Fragment size range in base pairs. Gene diversity, or expected heterozygosity assuming allele frequencies observed and random reproduction Inbreeding Coefficient: departure of a population from the expectation of random reproduction P Value for inbreeding coefficient (F_IS), per Fisher exact test as implemented in Genepop software
Storage Type string  
string  
string  
string  
string  
integer  
string  
string  
integer  
string  
float  
float  
string  
Measurement Type nominal nominal nominal nominal nominal ratio nominal nominal nominal nominal ratio ratio nominal
Measurement Values Domain
Definition any text
Definition any text
Definition any text
Definition any text
Definition any text
Unit number
Precision 1
Type real
Definition any number
Definition any text
Definition any number
Definition any text
Unit number
Precision 0.001
Type real
Min
Max
Unit dimensionless
Precision 0.001
Type real
Min -1 
Max
Definition any text
Missing Value Code              
Code -99999
Expl No presence of null alleles.
       
Code -99999
Expl No P value recorded.
Accuracy Report                          
Accuracy Assessment                          
Coverage                          
Methods